Cluster Information
Revision as of 09:10, 22 June 2009 by Amweeden06 (talk | contribs) (→Summer of Fun (2009): We will now be running area under the curve)
Contents
Summer of Fun (2009)
| GalaxSee (MPI) | area-under-curve (MPI) | area-under-curve (Hybrid) | |||||||
|---|---|---|---|---|---|---|---|---|---|
| acl0-5 | bs0-5 GigE | bs0-5 IB | acl0-5 | bs0-5 GigE | bs0-5 IB | acl0-5 | bs0-5 GigE | bs0-5 IB | |
| np 2 | |||||||||
| np 3 | |||||||||
| np 4 | |||||||||
| np 5 | |||||||||
| np 6 | |||||||||
| np 7 | |||||||||
| np 8 | |||||||||
| np 9 | |||||||||
| np 10 | |||||||||
| np 11 | |||||||||
| np 12 | |||||||||
What works so far? B = builds, R = runs, W = works
| B-builds, R-runs | area under curve | GalaxSee (standalone) | ||||||
|---|---|---|---|---|---|---|---|---|
| Serial | MPI | OpenMP | Hybrid | Serial | MPI | OpenMP | Hybrid | |
| acls | BRW | BRW | BRW | BRW | BRW | |||
| bobsced0 | BRW | BRW | BRW | BRW | BRW | |||
| c13 | BRW | |||||||
| pople | ||||||||
| Charlie's laptop | BRW | |||||||
Implementations of area under the curve
- Serial
- OpenMP (shared)
- MPI (message passing)
- MPI (hybrid mp and shared)
- OpenMP + MPI (hybrid)
GalaxSee Goals
- Good piece of code, serves as teaching example for n-body problems in petascale.
- Dials, knobs, etc. in place to easily control how work is distributed when running in parallel.
- Architecture generally supports hybrid model running on large-scale constellations.
- Produces runtime data that enables nice comparisons across multiple resources (scaling, speedup, efficiency).
- Render in BCCD, metaverse, and /dev/null environments.
- Serial version
- Improve performance on math?
GalaxSee - scale to petascale with MPI and OpenMP hybrid.
- GalaxSee - render in-world and steer from in-world.
- Area under a curve - serial, MPI, and OpenMP implementations.
- OpenMPI - testing, performance.
- Start May 11th
LittleFe
- Testing
- Documentation
- Touch screen interface
To Do
- Subscribe to ccg@cs.earlham.edu
- Work on two poster abstracts
- Work on team essay
Notes from May 21, 2009 Review
- Combined Makefiles with defines to build on a particular platform
- Write a driver script for GalaxSee ala the area under the curve script, consider combining
- Schema
- date, program_name, program_version, style, command line, compute_resource, NP, wall_time
- Document the process from start to finish
- Consider how we might iterate over e.g. number of stars, number of segments, etc.
- Command line option to stat.pl that provides a Torque wrapper for the scripts.
- Lint all code, consistent formatting
- Install latest and greatest Intel compiler in /cluster/bobsced
(Old) To Do
BCCD Liberation
- v1.1 release - upgrade procedures
Curriculum Modules
- POVRay
- GROMACS
- Energy and Weather
- Dave's math modules
- Standard format, templates, how-to for V and V
LittleFe
- Explore machines from first Intel donation (notes and pictures)
- Build 4 SCED units
Infrastructure
- Masa's GROMACS interface on Cairo
- gridgate configuration, Open Science Grid peering
- hopper'
SC Education
- Scott's homework (see the message)
Current Projects
Past Projects
General Stuff
- Todo
- General
- Hopper
- Howto's
- Networking
- 2005-11-30 Meeting
- 2006-12-12 Meeting
- 2006-02-02 Meeting
- 2006-03-16 Meeting
- 2006-04-06 Meeting
- Node usage
- Numbers for Netgear switches
- Latex Poster Creation
- Bugzilla Etiquette
Items Particular to a Specific Cluster
Curriculum Modules
Possible Future Projects
Archive
- TeraGrid '06 (Indianapolis, June 12-15, 2006)
- SIAM Parallel Processing 2006 (San Fransisco, February 22-24, 2006)
- Conference webpage
- Little-Fe abstract
- Low Latency Kernal abstract
- Folding@Clusters
- Best practices for teaching parallel programming to science faculty (Charlie only)
