Bobsced Cluster

Todo

• 411 tools
  • fix ganglia to recognize broadcasts & update
• Naming scheme
  • bs* vs compute-*-* vs c*-*
  • This is terrible it needs work
• Updating bobsced0's RPM repo
  • yum-- free
  • up2date-- RHEL
  • "Aborting the rocks-update tool while the tool is downloading RPMs might produce corrupted RPM packages (SDSC Toolkit)" from pr_troubleshooting.doc
• NIS map
  • /etc/passwd & /etc/group permissions
  • An architecture without a variable amount of delay before BobSCEd is updated would be nice.
• What broke cluster-fork?
• NAT & NFS
  • Mailing list
  • Mailing list
  • We should consider flattening the network, that is moving everything into the 159.28.234/24 subnet.
• Stop the hourly cron from producing output on stdout unless there is an error
• Setup and test Infiniband fabric
• Why does hopper see an interface flap from bobsced0?
• bosced0 wants to be the DNS server for the compute nodes

Howtos

Updating nodes to be kickstarted & adding new packages

• bobsced0 can be updated by just installing rpms
• Check for an RPM in: /state/partition1/home/install/rocks-dist/lan/x86_64/RedHat/RPMS/
• Edit /home/install/site-profiles/4.1.1/nodes/extend-compute.xml
  • Add a package i.e. <package arch="x86_64">libgfortran</package>
• Update the files that get loaded on kickstart:
  • cd /home/install
  • rocks-dist dist
• Check the kickstart file
  • dbreport kickstart c0-0
• If there were no errors, kickstart the node. i.e.:
  • shoot-node c0-0
• Check the progress of a kickstart
  • ssh –p 2200 compute-x-x

Adding post install scripts to kickstart

• Edit /home/install/site-profiles/4.1.1/nodes/extend-compute.xml
• Add a <post arch="x86_64"> entry i.e.:
  • <post arch="x86_64">cp /cluster/ganglia/gmond.conf /etc/gmond.conf</post>

Using 411 tools

• make -C /var/411 on bobsced0
  • Copies the files to /etc/411.d/ using 411put
  • Notifies client nodes to run 411get using ganglia
  • The files that are watched can be updated by changing the makefiles in /var/411/
• cluster-fork /opt/rocks/bin/411get --all

cluster-fork

• Used to run commands on all cluster nodes like the c3tools
  • Broken, see todo
  • Temporary fix: cluster-fork --nodes="compute-0-%d:0-14" <command>

disabling reinstall (kickstart) after hard reset

• Official documentation
• From the mailing list

Generating an up-to-date machinefile

Ethernet:

cluster-fork /sbin/ifconfig -a | grep -1 Ethernet | awk '{printf("%s slots=4\n",$2)}' | cut -d : -f 2 > bs-eth-hosts

Infiniband:

cluster-fork /sbin/ifconfig -a | grep -1 UNSPEC | awk '{printf("%s slots=4\n",$2)}' | cut -d : -f 2 > bs-ib-hosts 

Notice that the only difference is the search field in the first grep command. UNSPEC here refers to Infiniband.

General Info

NIS Importing

• /etc/cron.hourly/importNIS.sh
• This comes from the rocks users guide & a mailing list thread.

http

• /cluster/www/bobsced/

/cluster

• Mounted using /etc/rc.local

/cluster/bobsced/etc/

• What's in here? Things for client or bobsced0?

References

Rocks Documentation

• Rocks users guide pdf
• Online version
• Platform rocks

Troubleshooting Platform Open Cluster Stack (OCS) and Platform Lava

• pr_troubleshooting.doc

411 Tools

• 411tools

RHEL

• RHEL
• More RHEL