Mb-sumt-output
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MrBayes > sumt filename=Testudinoidea_all-1.nex.mb nruns=1 ntrees=1
Setting sumt filename to Testudinoidea_all-1.nex.mb
Setting sumt nruns to 1
Setting sumt ntrees to 1
Summarizing trees in file "Testudinoidea_all-1.nex.mb.t"
UNIX line termination
Examining file ...
Found one tree block in file "Testudinoidea_all-1.nex.mb.t" with 5001 trees in last block
Tree reading status:
0 10 20 30 40 50 60 70 80 90 100
v-------v-------v-------v-------v-------v-------v-------v-------v-------v-------v
*********************************************************************************
The following 13 species were absent from trees:
Cuora_bourreti, Cuora_picturata, Cuora_serrata,
Cyclemys_ovata, Vijayachelys_silvatica, Batagur_kachuga_F1,
Pangshura_sylhetensis, Mauremys_iversoni, Mauremys_pritchardi,
Melanochelys_tricarinata, Ocadia_glyphistoma, Ocadia_philippeni, and Mongolemys_sp.
Read 5001 trees from last tree block (sampling 5001 of them)
General explanation:
A taxon bibartition is specified by removing a branch, thereby dividing the
species into those to the left and those to the right of the branch. Here,
taxa to one side of the removed branch are denoted "." and those to the
other side are denoted "*". The output includes the bipartition number
(ID; sorted from highest to lowest probability), bipartition (e.g., ...**..),
number of times the bipartition was observed (#obs), the posterior probabil-
ity of the bipartition, and, if branch lengths were recorded on the trees in
the file, the average (Mean(v)) and variance (Var(v)) of the lengths. Each
"." or "*" in the bipartition represents a taxon that is to the left or
right of the removed branch. A list of the taxa in the bipartition is given
before the list of bipartitions. If you summarize several independent analy-
ses, convergence diagnostics are presented for both the posterior probabil-
ities of bipartitions (bipartition or split frequencies) and branch lengths
(if recorded on the trees in the files). In the former case, the diagnostic is
the standard deviation of the partition frequencies (Stdev(s)), in the second
case it is the potential scale reduction factor (PSRF) of Gelman and Rubin
(1992). Stdev(s) is expected to approach 0 and PSRF is expected to approach 1
as runs converge onto the posterior probability distribution. Note that these
values may be unreliable if the partition is not present in all runs (the
last column indicates the number of runs that sampled the partition if more
than one run is summarized). The PSRF is also sensitive to small sample
sizes and it should only be considered a rough guide to convergence since
some of the assumptions allowing one to interpret it as a true potential
scale reduction factor are violated in the phylogenetic context.
List of taxa in bipartitions:
1 -- Batagur_baska
2 -- Batagur_borneoensis
3 -- Chinemys_megalocephala
4 -- Chinemys_nigricans
5 -- Chinemys_reevesii
6 -- Cuora_amboinensis
7 -- Cuora_aurocapitata
8 -- Cuora_flavomarginata
9 -- Cuora_galbinifrons
10 -- Cuora_mccordi
11 -- Cuora_pani
12 -- Cuora_trifasciata
13 -- Cuora_zhoui
14 -- Cyclemys_atripons
15 -- Cyclemys_dentata
16 -- Cyclemys_tcheponensis
17 -- Cyclemys_oldhamii
18 -- Cyclemys_pulchristriata
19 -- Geoclemys_hamiltonii
20 -- Geoemyda_japonica
21 -- Geoemyda_spengleri
22 -- Hardella_thurjii
23 -- Heosemys_depressa
24 -- Heosemys_grandis_Laos
25 -- Siebenrockiella_leytensis
26 -- Heosemys_spinosa
27 -- Heosemys_annandalii
28 -- Batagur_dhongoka
29 -- Pangshura_smithi
30 -- Pangshura_tecta
31 -- Pangshura_tentoria
32 -- Batagur_trivittata
33 -- Leucocephalon_yuwonoi
34 -- Malayemys_subtrijuga_Laos
35 -- Mauremys_annamensis
36 -- Mauremys_caspica
37 -- Mauremys_rivulata
38 -- Mauremys_japonica
39 -- Mauremys_leprosa
40 -- Mauremys_mutica
41 -- Melanochelys_trijuga_indopeninsularis
42 -- Melanochelys_trijuga_parkeri
43 -- Morenia_ocellata
44 -- Morenia_petersi
45 -- Notochelys_platynota
46 -- Ocadia_sinensis
47 -- Orlitia_borneoensis
48 -- Pyxidea_mouhotii_mouhotii
49 -- Rhinoclemmys_annulata
50 -- Rhinoclemmys_areolata
51 -- Rhinoclemmys_diademata
52 -- Rhinoclemmys_funerea
53 -- Rhinoclemmys_melanosterna
54 -- Rhinoclemmys_nasuta
55 -- Rhinoclemmys_pulcherrima
56 -- Rhinoclemmys_punctularia
57 -- Rhinoclemmys_rubida
58 -- Sacalia_bealei
59 -- Sacalia_pseudoccellata
60 -- Sacalia_quadriocellata
61 -- Siebenrockiella_crassicollis
62 -- Chersina_angulata
63 -- Geochelone_elegans
64 -- Chelonoidis_nigra
65 -- Astrochelys_radiata
66 -- Centrochelys_sulcata
67 -- Gopherus_polyphemus
68 -- Homopus_boulengeri
69 -- Indotestudo_elongata
70 -- Kinixys_belliana
71 -- Kinixys_homeana
72 -- Malacochersus_tornieri
73 -- Manouria_impressa
74 -- Psammobates_tentorius
75 -- Pyxis_arachnoides
76 -- Testudo_graeca
77 -- Glyptemys_insculpta
78 -- Glyptemys_muhlenbergii
79 -- Chrysemys_picta
80 -- Deirochelys_reticularia
81 -- Emys_orbicularis
82 -- Emydoidea_blandingii
83 -- Graptemys_gibbonsi
84 -- Malaclemys_terrapin
85 -- Pseudemys_rubriventis
86 -- Terrapene_carolina
87 -- Trachemys_scripta
88 -- Kinosternon_flavescens
89 -- Chelonia_mydas
90 -- Platysternon_megacephalum
91 -- Pelodiscus_sinensis
92 -- Pelomedusa_subrufa
Summary statistics for taxon bipartitions:
ID -- Partition #obs Probab. Mean(v) Var(v)
---------------------------------------------------------------------------------------------------------------------------------------
1 -- ...........................*................................................................ 5001 1.000000 0.027412 0.000023
2 -- ..................................................................................*......... 5001 1.000000 0.012053 0.000072
3 -- ......*..................................................................................... 5001 1.000000 0.001774 0.000005
4 -- ........................................................................*................... 5001 1.000000 0.060434 0.000100
5 -- .....................................*...................................................... 5001 1.000000 0.021092 0.000018
6 -- ..................*......................................................................... 5001 1.000000 0.076066 0.000100
7 -- .......*.................................................................................... 5001 1.000000 0.014196 0.000011
8 -- ...........................................................................................* 5001 1.000000 0.464270 0.003395
9 -- ...................................................................................*........ 5001 1.000000 0.018306 0.000016
10 -- ....................................................................*....................... 5001 1.000000 0.065003 0.000086
11 -- .............................................................................*.............. 5001 1.000000 0.013398 0.000027
12 -- ...................................................*........................................ 5001 1.000000 0.007352 0.000020
13 -- .*.......................................................................................... 5001 1.000000 0.016387 0.000015
14 -- ......................*..................................................................... 5001 1.000000 0.034118 0.000040
15 -- ....*....................................................................................... 5001 1.000000 0.001472 0.000013
16 -- ......................................................................................*..... 5001 1.000000 0.018614 0.000110
17 -- ...................*........................................................................ 5001 1.000000 0.039892 0.000036
18 -- .................................................*.......................................... 5001 1.000000 0.020242 0.000044
19 -- ...........................................................*................................ 5001 1.000000 0.019615 0.000018
20 -- ......................................*..................................................... 5001 1.000000 0.034014 0.000023
21 -- .....*...................................................................................... 5001 1.000000 0.035829 0.000029
22 -- ......................................................................*..................... 5001 1.000000 0.029251 0.000084
23 -- ..........................................................*................................. 5001 1.000000 0.015626 0.000023
24 -- .......................*.................................................................... 5001 1.000000 0.025408 0.000026
25 -- .........*.................................................................................. 5001 1.000000 0.028046 0.000025
26 -- .....................*...................................................................... 5001 1.000000 0.048920 0.000054
27 -- ...................................................................*........................ 5001 1.000000 0.060696 0.000078
28 -- ............................................................................*............... 5001 1.000000 0.018238 0.000049
29 -- .................*.......................................................................... 5001 1.000000 0.006107 0.000009
30 -- .......................................*.................................................... 5001 1.000000 0.026391 0.000017
31 -- ..............*............................................................................. 5001 1.000000 0.005479 0.000011
32 -- ........................................................*................................... 5001 1.000000 0.051640 0.000048
33 -- ...............................................*............................................ 5001 1.000000 0.036163 0.000026
34 -- ............*............................................................................... 5001 1.000000 0.007886 0.000010
35 -- ..................................*......................................................... 5001 1.000000 0.020233 0.000019
36 -- ................................................................*........................... 5001 1.000000 0.040512 0.000118
37 -- ....................................................*....................................... 5001 1.000000 0.006356 0.000012
38 -- ...........*................................................................................ 5001 1.000000 0.005216 0.000013
39 -- ..*......................................................................................... 5001 1.000000 0.002415 0.000009
40 -- ..................................................*......................................... 5001 1.000000 0.005954 0.000007
41 -- ..........................................................................................*. 5001 1.000000 0.313317 0.001904
42 -- ..............................................................................*............. 5001 1.000000 0.022914 0.000020
43 -- .............................................*.............................................. 5001 1.000000 0.018312 0.000018
44 -- ..........................................................................*................. 5001 1.000000 0.062534 0.000196
45 -- ...................................*........................................................ 5001 1.000000 0.019889 0.000017
46 -- .......................................................................................*.... 5001 1.000000 0.232039 0.000812
47 -- .............................................................*.............................. 5001 1.000000 0.026524 0.000038
48 -- .....................................................*...................................... 5001 1.000000 0.048608 0.000044
49 -- ............................*............................................................... 5001 1.000000 0.018469 0.000016
50 -- ............................................*............................................... 5001 1.000000 0.054699 0.000068
51 -- ............................................................*............................... 5001 1.000000 0.069582 0.000071
52 -- .......................................................*.................................... 5001 1.000000 0.005289 0.000010
53 -- ........................................*................................................... 5001 1.000000 0.007044 0.000025
54 -- .................................................................*.......................... 5001 1.000000 0.038597 0.000035
55 -- ..................................................................*......................... 5001 1.000000 0.075696 0.000138
56 -- .........................*.................................................................. 5001 1.000000 0.037851 0.000035
57 -- .................................*.......................................................... 5001 1.000000 0.073018 0.000111
58 -- .........................................................*.................................. 5001 1.000000 0.037257 0.000033
59 -- ..........................................*................................................. 5001 1.000000 0.036871 0.000115
60 -- .............................*.............................................................. 5001 1.000000 0.021778 0.000018
61 -- ...*........................................................................................ 5001 1.000000 0.011435 0.000008
62 -- ...............................................................................*............ 5001 1.000000 0.068794 0.000108
63 -- .....................................................................................*...... 5001 1.000000 0.039182 0.000042
64 -- ....................*....................................................................... 5001 1.000000 0.046035 0.000057
65 -- .....................................................................*...................... 5001 1.000000 0.037854 0.000031
66 -- .........................................................................*.................. 5001 1.000000 0.080278 0.000094
67 -- ................................................................................*........... 5001 1.000000 0.024300 0.000017
68 -- ....................................*....................................................... 5001 1.000000 0.022260 0.000016
69 -- ..........*................................................................................. 5001 1.000000 0.006676 0.000014
70 -- .******************************************************************************************* 5001 1.000000 0.039987 0.000070
71 -- .......................................................................*.................... 5001 1.000000 0.071902 0.000091
72 -- ......................................................*..................................... 5001 1.000000 0.028761 0.000031
73 -- ........*................................................................................... 5001 1.000000 0.023147 0.000020
74 -- ...............................................................*............................ 5001 1.000000 0.046559 0.000050
75 -- .........................................*.................................................. 5001 1.000000 0.005533 0.000036
76 -- ................*........................................................................... 5001 1.000000 0.036554 0.000032
77 -- ...............*............................................................................ 5001 1.000000 0.008324 0.000027
78 -- ................................................*........................................... 5001 1.000000 0.018684 0.000030
79 -- ........................................................................................*... 5001 1.000000 0.087208 0.000219
80 -- ..............................................................*............................. 5001 1.000000 0.053519 0.000082
81 -- ........................*................................................................... 5001 1.000000 0.046216 0.000117
82 -- ..........................*................................................................. 5001 1.000000 0.041994 0.000044
83 -- ...........................................*................................................ 5001 1.000000 0.038113 0.000068
84 -- ..............................................*............................................. 5001 1.000000 0.053092 0.000055
85 -- ....................................................................................*....... 5001 1.000000 0.028480 0.000042
86 -- ...............................*............................................................ 5001 1.000000 0.018461 0.000018
87 -- ...........................................................................*................ 5001 1.000000 0.060825 0.000059
88 -- ..............................*............................................................. 5001 1.000000 0.016918 0.000015
89 -- .............*.............................................................................. 5001 1.000000 0.002610 0.000014
90 -- ................................*........................................................... 5001 1.000000 0.060283 0.000060
91 -- .................................................................................*.......... 5001 1.000000 0.023379 0.000038
92 -- .........................................................................................*.. 5001 1.000000 0.131360 0.000314
93 -- ............................*.*............................................................. 5000 0.999800 0.012636 0.000010
94 -- .*.............................*............................................................ 4999 0.999600 0.012494 0.000013
95 -- ............................***............................................................. 4999 0.999600 0.043112 0.000044
96 -- ...................**....................................................................... 4999 0.999600 0.031396 0.000035
97 -- ................................................................................**.......... 4999 0.999600 0.012221 0.000068
98 -- ....................................................................*..*...*................ 4998 0.999400 0.022599 0.000027
99 -- .................................*............*............................................. 4998 0.999400 0.028700 0.000051
100 -- ..........................................................**................................ 4998 0.999400 0.017327 0.000013
101 -- ..***....................................................................................... 4998 0.999400 0.004712 0.000003
102 -- ..*.*....................................................................................... 4998 0.999400 0.014846 0.000009
103 -- ........................*...................................*............................... 4998 0.999400 0.042668 0.000061
104 -- .....................................................................**..................... 4998 0.999400 0.041257 0.000048
105 -- .............*...*.......................................................................... 4997 0.999200 0.023556 0.000017
106 -- ..................................................*....*.................................... 4997 0.999200 0.003853 0.000004
107 -- .........................................................***................................ 4996 0.999000 0.013736 0.000013
108 -- ..................................................***..*.................................... 4996 0.999000 0.020607 0.000014
109 -- .................................................****..*.................................... 4996 0.999000 0.007845 0.000007
110 -- .............*****.......................................................................... 4996 0.999000 0.025697 0.000031
111 -- ............................................................................**..**...*...... 4996 0.999000 0.014813 0.000019
112 -- ........................................**.................................................. 4996 0.999000 0.066763 0.000071
113 -- ................................*...........*............................................... 4996 0.999000 0.016652 0.000016
114 -- ..***................................*.......*.............................................. 4995 0.998800 0.012845 0.000007
115 -- .....********..................................*............................................ 4995 0.998800 0.020635 0.000017
116 -- ..***.............................******.....*.............................................. 4995 0.998800 0.015414 0.000010
117 -- ...................................**....................................................... 4995 0.998800 0.008022 0.000005
118 -- ............................................................................**.............. 4995 0.998800 0.013446 0.000012
119 -- ...................................................................................*..*..... 4995 0.998800 0.011526 0.000021
120 -- ......*...***............................................................................... 4995 0.998800 0.015767 0.000009
121 -- ..*******************.*****.....************************************************************ 4995 0.998800 0.012196 0.000015
122 -- ..***********.....................******.....*.*............................................ 4995 0.998800 0.013696 0.000013
123 -- ..........................................**................................................ 4995 0.998800 0.052414 0.000061
124 -- ..............**............................................................................ 4995 0.998800 0.022471 0.000015
125 -- ................................................*********................................... 4995 0.998800 0.063800 0.000056
126 -- ................................................*.....*..................................... 4995 0.998800 0.013746 0.000013
127 -- ...............................................................*.....**..................... 4995 0.998800 0.008943 0.000011
128 -- ...............................................................................*..*......... 4995 0.998800 0.026289 0.000020
129 -- .............................................................*.....*........................ 4995 0.998800 0.015123 0.000016
130 -- ..............................................................*..*.......................... 4995 0.998800 0.012542 0.000011
131 -- ..****************.**.*****.....*.********..**.********************************************* 4994 0.998600 0.020814 0.000020
132 -- ..****************.**.*****.....**********..************************************************ 4994 0.998600 0.015171 0.000015
133 -- ..............................................................**.*...**..................... 4994 0.998600 0.006997 0.000006
134 -- ......................**..*................................................................. 4994 0.998600 0.013976 0.000012
135 -- ..................................*....*.................................................... 4994 0.998600 0.008687 0.000005
136 -- ...................................................**....................................... 4994 0.998600 0.003873 0.000002
137 -- .............*****....**.**.....*...........*............***................................ 4994 0.998600 0.016629 0.000014
138 -- ......................**.**................................................................. 4993 0.998400 0.017883 0.000015
139 -- ..****************....**.**.....*.********..**.*************.******************************* 4993 0.998400 0.009649 0.000010
140 -- ..*******************.*****.***.************************************************************ 4993 0.998400 0.007579 0.000008
141 -- .............................................................*.....*.....*.................. 4993 0.998400 0.008135 0.000008
142 -- ............................................................................**************** 4992 0.998200 0.054454 0.000079
143 -- .............................................................******************************* 4992 0.998200 0.011568 0.000013
144 -- ......*....*................................................................................ 4992 0.998200 0.004896 0.000002
145 -- .............***.*.......................................................................... 4992 0.998200 0.010584 0.000009
146 -- .............................................................*****.*****.***................ 4992 0.998200 0.014678 0.000012
147 -- .............................................................*****.*.**..**................. 4992 0.998200 0.019399 0.000015
148 -- .............................................................***************................ 4992 0.998200 0.022173 0.000022
149 -- ................................................................*.........*................. 4991 0.998000 0.017754 0.000018
150 -- ................................................*********....******************************* 4991 0.998000 0.009481 0.000012
151 -- ..*************************.***.************************************************************ 4990 0.997800 0.006728 0.000007
152 -- ............................................................................***********..... 4990 0.997800 0.045716 0.000054
153 -- .............*****....**.**.....*...........*............................................... 4990 0.997800 0.006802 0.000006
154 -- .......................................................................................**.** 4990 0.997800 0.016673 0.000030
155 -- ..............................................................................*.....*....... 4990 0.997800 0.013521 0.000011
156 -- .......***.................................................................................. 4990 0.997800 0.004357 0.000004
157 -- ......*...**................................................................................ 4990 0.997800 0.003153 0.000002
158 -- ..............................................................................**..***.*..... 4989 0.997600 0.030972 0.000028
159 -- ..****************....**.**.....*.******....**.*.........***................................ 4986 0.997001 0.008573 0.000010
160 -- ...............................................................................*..**..*..... 4981 0.996001 0.010790 0.000010
161 -- ..........................................................................................** 4977 0.995201 0.049631 0.000218
162 -- .*.........................*...*............................................................ 4976 0.995001 0.006256 0.000020
163 -- ..***..............................****......*.............................................. 4970 0.993801 0.002802 0.000002
164 -- ..................................................................*.....*................... 4963 0.992402 0.009746 0.000012
165 -- ..*******************.*****.....**********..************************************************ 4960 0.991802 0.006267 0.000008
166 -- ..****************....**.**.....*.********..**.*.........***................................ 4912 0.982204 0.006569 0.000008
167 -- ......*******............................................................................... 4843 0.968406 0.003435 0.000003
168 -- ......*******..................................*............................................ 4621 0.924015 0.003963 0.000004
169 -- .................................................*****.**................................... 4590 0.917816 0.005711 0.000005
170 -- ......................**.................................................................... 4430 0.885823 0.008038 0.000009
171 -- ...................**...*...................................*............................... 4138 0.827435 0.006151 0.000011
172 -- ........**.................................................................................. 4068 0.813437 0.004215 0.000003
173 -- .....................................*.......*.............................................. 3917 0.783243 0.002440 0.000002
174 -- .................................................*****.*.................................... 3846 0.769046 0.003749 0.000004
175 -- ....................................................................*......*................ 3604 0.720656 0.008855 0.000018
176 -- .......................................................................................***** 3534 0.706659 0.006308 0.000012
177 -- .......................................................................................*..** 3413 0.682464 0.021608 0.000079
178 -- .............................................................*..*..*.....**................. 3411 0.682064 0.003009 0.000004
179 -- ............................................................................**..**.......... 2645 0.528894 0.005244 0.000006
180 -- ...................................**.*..................................................... 2462 0.492302 0.001775 0.000001
181 -- ................................................................................**...*...... 2347 0.469306 0.004918 0.000007
182 -- .............*****..............*...........*............................................... 1979 0.395721 0.002735 0.000005
183 -- ..***................................**......*.............................................. 1695 0.338932 0.001424 0.000001
184 -- ......................**.**.....*...........*............................................... 1672 0.334333 0.002224 0.000003
185 -- .......................................................................................**... 1556 0.311138 0.008630 0.000019
186 -- ....................................................................*..*.................... 1373 0.274545 0.005475 0.000007
187 -- .............*****....**.**................................................................. 1344 0.268746 0.001954 0.000002
188 -- ............................................................................***********..*.. 1256 0.251150 0.004779 0.000079
189 -- ..***........................................*.............................................. 986 0.197161 0.001851 0.000010
190 -- .......**................................................................................... 925 0.184963 0.003285 0.000003
191 -- ..............................................................****...**...*................. 863 0.172565 0.002340 0.000003
192 -- ..***..............................***.......*.............................................. 833 0.166567 0.001515 0.000001
193 -- .............................................................***.*.*.**..*.................. 721 0.144171 0.002609 0.000027
194 -- ......................*...*................................................................. 567 0.113377 0.006409 0.000007
195 -- ..****************.**.**.**.....*.********..**.*************.******************************* 448 0.089582 0.003321 0.000005
196 -- .....................................................*..*................................... 443 0.088582 0.002469 0.000003
197 -- ..****************....*****.....*.********..**.********************************************* 409 0.081784 0.003300 0.000004
198 -- .................................................****..**................................... 386 0.077185 0.002196 0.000003
---------------------------------------------------------------------------------------------------------------------------------------
Clade credibility values:
Subtree rooted at node 100:
/--------------- Batagur_baska (1)
|
| /----- Batagur_borneoensis (2)
/-100-+ /-100+
| | | \----- Batagur_trivittata (39)
| \-100+
/-100+ \---------- Batagur_dhongoka (33)
| |
| \--------------------- Hardella_thurjii (27)
|
/-100+ /----- Pangshura_smithi (35)
| | /-100+
| | | \----- Pangshura_tentoria (38)
| \------100------+
--99-+ \---------- Pangshura_tecta (37)
|
| /----- Morenia_ocellata (53)
\-----------100-----------+
\----- Morenia_petersi (54)
Subtree rooted at node 123:
/------------------------------- Cuora_amboinensis (6)
|
| /----- Cuora_aurocapitata (7)
| /-100+
| | \----- Cuora_trifasciata (15)
| /-100+
| | \---------- Cuora_pani (12)
--100+ /-100-+
| | \--------------- Cuora_zhoui (16)
| |
| /-97-+ /---------- Cuora_flavomarginata (9)
| | | |
| | \----100---+ /----- Cuora_galbinifrons (10)
\-92-+ \-81-+
| \----- Cuora_mccordi (11)
|
\-------------------------- Pyxidea_mouhotii_mouhotii (60)
Subtree rooted at node 136:
/------ Cyclemys_atripons (17)
/-100-+
| \------ Cyclemys_pulchristriata (22)
/-100-+
| | /------ Cyclemys_dentata (18)
| \-100-+
/-100-+ \------ Cyclemys_tcheponensis (19)
| |
| \------------------ Cyclemys_oldhamii (20)
|
| /------ Heosemys_depressa (28)
| /--89-+
| | \------ Heosemys_grandis_Laos (29)
/-100-+ /-100-+
| | | \------------ Heosemys_annandalii (32)
| |-100-+
| | \------------------ Heosemys_spinosa (31)
| |
| | /------ Leucocephalon_yuwonoi (40)
--100-+ \-------100-------+
| \------ Notochelys_platynota (55)
|
| /------------ Sacalia_bealei (70)
| |
\-------100-------+ /------ Sacalia_pseudoccellata (71)
\-100-+
\------ Sacalia_quadriocellata (72)
Subtree rooted at node 124:
/----- Chinemys_megalocephala (3)
/-100+
| \----- Chinemys_reevesii (5)
/-100+
| \---------- Chinemys_nigricans (4)
/-100-+
| | /----- Mauremys_japonica (46)
| \----78---+
| \----- Ocadia_sinensis (58)
|
/-99-+ /----- Mauremys_caspica (43)
| |------100------+
| | \----- Mauremys_rivulata (44)
| |
/-100+ \--------------------- Mauremys_leprosa (47)
| |
| | /----- Mauremys_annamensis (42)
--100+ \---------100--------+
| \----- Mauremys_mutica (48)
|
\------------------------------- (123)
Subtree rooted at node 148:
/----- Rhinoclemmys_annulata (61)
/-----------100-----------+
| \----- Rhinoclemmys_pulcherrima (67)
|
| /--------------- Rhinoclemmys_areolata (62)
| |
| | /----- Rhinoclemmys_diademata (63)
| /-100-+ /-100+
--100+ | | | \----- Rhinoclemmys_punctularia (68)
| | \-100+
| | | /----- Rhinoclemmys_funerea (64)
| /-77-+ \-100+
| | | \----- Rhinoclemmys_melanosterna (65)
| | |
\-92-+ \--------------------- Rhinoclemmys_nasuta (66)
|
\-------------------------- Rhinoclemmys_rubida (69)
Subtree rooted at node 163:
/----- Chersina_angulata (74)
/-100+
| \----- Homopus_boulengeri (80)
/-100+
| \---------- Psammobates_tentorius (86)
/--68-+
| | /----- Astrochelys_radiata (77)
| \---100---+
| \----- Pyxis_arachnoides (87)
|
/-100+ /----- Geochelone_elegans (75)
| | /---100---+
| | | \----- Centrochelys_sulcata (78)
| | |
| \-100-+ /---------- Chelonoidis_nigra (76)
| | |
| \-100+ /----- Kinixys_belliana (82)
/-100+ \-100+
| | \----- Kinixys_homeana (83)
| |
| | /----- Indotestudo_elongata (81)
| | /-72-+
--100+ | | \----- Testudo_graeca (88)
| \------100------+
| \---------- Malacochersus_tornieri (84)
|
| /----- Gopherus_polyphemus (79)
\------------99-----------+
\----- Manouria_impressa (85)
Subtree rooted at node 164:
/----- (100)
/-100+
| \----- Geoclemys_hamiltonii (23)
/-100+
| | /----- Malayemys_subtrijuga_Laos (41)
| \-100+
| \----- Orlitia_borneoensis (59)
/-100-+
| | /----- Geoemyda_japonica (24)
| | /-100+
| | | \----- Geoemyda_spengleri (26)
| \-83-+
| | /----- Siebenrockiella_leytensis (30)
/-100+ \-100+
| | \----- Siebenrockiella_crassicollis (73)
| |
| | /----- (124)
| | /-100+
| | | \----- (136)
/-100+ \----98----+
| | | /----- Melanochelys_trijuga_indopeninsularis (50)
| | \-100+
| | \----- Melanochelys_trijuga_parkeri (51)
--100+ |
| \-------------------------- (148)
|
\------------------------------- (163)
Subtree rooted at node 176:
/-------------------------- (164)
|
| /----- Glyptemys_insculpta (89)
| /-100+
| | \----- Glyptemys_muhlenbergii (90)
| /-53-+
/-71-+ | | /----- Emys_orbicularis (93)
| | | \-100+
| | /-100-+ \----- Emydoidea_blandingii (94)
| | | |
| | | \--------------- Terrapene_carolina (98)
| | |
| \-100+ /----- Chrysemys_picta (91)
| | /---100---+
| | | \----- Pseudemys_rubriventis (97)
--100+ | |
| \-100-+ /----- Deirochelys_reticularia (92)
| | /-100+
| | | \----- Graptemys_gibbonsi (95)
| \-100+
| | /----- Malaclemys_terrapin (96)
| \-100+
| \----- Trachemys_scripta (99)
|
\------------------------------- Platysternon_megacephalum (103)
Root part of tree:
/------------------------------------ Pelomedusa_subrufa (105)
|
|------------------------------------ Pelodiscus_sinensis (104)
|
+ /------------ (176)
| /-----68----+
| | \------------ Chelonia_mydas (101)
\----100----+
\------------------------ Kinosternon_flavescens (100)
Phylogram:
/------------------------------------------------------ Pelomedusa_subrufa (105)
|
|------------------------------------ Pelodiscus_sinensis (104)
|
| /----- Batagur_baska (1)
| |
| | /-- Batagur_borneoensis (2)
| /+/+
| |||\-- Batagur_trivittata (39)
| |\+
| /+ \--- Batagur_dhongoka (33)
| ||
| |\------ Hardella_thurjii (27)
| |
| /+ /-- Pangshura_smithi (35)
| || /-+
| || | \-- Pangshura_tentoria (38)
| |\----+
| /+ \--- Pangshura_tecta (37)
| ||
| || /---- Morenia_ocellata (53)
| /-+\-----+
| | | \---- Morenia_petersi (54)
| | |
| /-+ \--------- Geoclemys_hamiltonii (23)
| | |
| | | /-------- Malayemys_subtrijuga_Laos (41)
| | \---+
| | \------ Orlitia_borneoensis (59)
| /+
| || /----- Geoemyda_japonica (24)
| ||/--+
| ||| \------ Geoemyda_spengleri (26)
| |\+
| | | /----- Siebenrockiella_leytensis (30)
| | \----+
| | \-------- Siebenrockiella_crassicollis (73)
| |
| | / Chinemys_megalocephala (3)
| | /-+
| | | \ Chinemys_reevesii (5)
| | |
| | |-- Chinemys_nigricans (4)
| | /-+
| | | |-- Mauremys_japonica (46)
| | | |
| | | \-- Ocadia_sinensis (58)
| | |
| | |/-- Mauremys_caspica (43)
| | |+
| | |\--- Mauremys_rivulata (44)
| | |
| | /-+---- Mauremys_leprosa (47)
| | | |
| | | |/-- Mauremys_annamensis (42)
| | | \+
| | | \--- Mauremys_mutica (48)
| | |
| | | /----- Cuora_amboinensis (6)
| | /+ |
| /+ || | / Cuora_aurocapitata (7)
| || || | |
| || || | |- Cuora_trifasciata (15)
| || || | /+
| || || | |\ Cuora_pani (12)
| || |\-+/-+
| || | || \- Cuora_zhoui (16)
| || | ||
| || | ||/-- Cuora_flavomarginata (9)
| || | |||
| || | ||+--- Cuora_galbinifrons (10)
| || | \+|
| || | |\---- Cuora_mccordi (11)
| || | |
| || | \---- Pyxidea_mouhotii_mouhotii (60)
| || |
| || | / Cyclemys_atripons (17)
| ||/+ /--+
| |||| | \- Cyclemys_pulchristriata (22)
| |||| /+
| |||| || /- Cyclemys_dentata (18)
| |||| |\--+
| |||| /--+ \- Cyclemys_tcheponensis (19)
| |||| | |
| |||| | \---- Cyclemys_oldhamii (20)
| |||| |
| |||| | /---- Heosemys_depressa (28)
| |||| | /+
+ /-+||| | |\--- Heosemys_grandis_Laos (29)
| | ||||/+ /-+
| | |||||| | \----- Heosemys_annandalii (32)
| | |\+|||-+
| | | |||| \----- Heosemys_spinosa (31)
| | | ||||
| | | |||| /------- Leucocephalon_yuwonoi (40)
| | | |\+\-+
| | | | | \------- Notochelys_platynota (55)
| | | | |
| | | | | /---- Sacalia_bealei (70)
| | | | | |
| | | | \-+ /-- Sacalia_pseudoccellata (71)
| | | | \-+
| | | | \-- Sacalia_quadriocellata (72)
| | | |
| | | | /- Melanochelys_trijuga_indopeninsularis (50)
| | | \------+
| | | \- Melanochelys_trijuga_parkeri (51)
| | |
| | | /-- Rhinoclemmys_annulata (61)
| | | /-+
| | | | \--- Rhinoclemmys_pulcherrima (67)
| | | |
| | | | /-- Rhinoclemmys_areolata (62)
| | | | |
| | | | | /- Rhinoclemmys_diademata (63)
| | | |/+ /+
| | \------+|| |\- Rhinoclemmys_punctularia (68)
| | ||\-+
| /-----+ || |/- Rhinoclemmys_funerea (64)
| | | || \+
| | | || \- Rhinoclemmys_melanosterna (65)
| | | ||
| | | \+------ Rhinoclemmys_nasuta (66)
| | | |
| | | \------ Rhinoclemmys_rubida (69)
| | |
| | | /--- Chersina_angulata (74)
| | | /-+
| | | | \------- Homopus_boulengeri (80)
| | | /+
| | | |\--------- Psammobates_tentorius (86)
| | | |
| | | | /----- Astrochelys_radiata (77)
| | | |-+
| | | | \-------- Pyxis_arachnoides (87)
| | | |
| | | /-+ /------ Geochelone_elegans (75)
| | | | |/+
| | | | ||\----- Centrochelys_sulcata (78)
| | | | ||
| | | | \+/----- Chelonoidis_nigra (76)
| | | | ||
| /+ | | \+ /----- Kinixys_belliana (82)
| || | /-+ \---+
| || | | | \---- Kinixys_homeana (83)
| || | | |
| || | | | /-------- Indotestudo_elongata (81)
| || | | | /+
| || \--+ | |\------- Testudo_graeca (88)
| || | \-+
| || | \--------- Malacochersus_tornieri (84)
| || |
| || |/--------- Gopherus_polyphemus (79)
| || \+
| || \------- Manouria_impressa (85)
| ||
| || /-- Glyptemys_insculpta (89)
| || /+
| || |\-- Glyptemys_muhlenbergii (90)
| || /+
| /-+| ||/--- Emys_orbicularis (93)
| | || |\+
| | || /-+ \--- Emydoidea_blandingii (94)
| | || | |
| | || | \----- Terrapene_carolina (98)
| | || |
| | |\----+ /--- Chrysemys_picta (91)
| | | | /+
| | | | |\---- Pseudemys_rubriventis (97)
| | | | |
| /-+ | \---+ /-------- Deirochelys_reticularia (92)
| | | | |/--+
| | | | || \-- Graptemys_gibbonsi (95)
| | | | \+
| | | | |/--- Malaclemys_terrapin (96)
| | | | \+
\-----+ | | \--- Trachemys_scripta (99)
| | |
| | \---------------- Platysternon_megacephalum (103)
| |
| \---------- Chelonia_mydas (101)
|
\--------------------------- Kinosternon_flavescens (100)
|-----------| 0.100 expected changes per site
Calculating tree probabilities...
Credible sets of trees (3019 trees sampled):
50 % credible set contains 612 trees
90 % credible set contains 2519 trees
95 % credible set contains 2769 trees
99 % credible set contains 2969 trees
