Sept 6-12 - Revision history

Damian at 16:31, 18 December 2009

2009-12-18T16:31:30Z

← Older revision		Revision as of 16:31, 18 December 2009
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	*[[Exercise 5.8]]		*[[Exercise 5.8]]
	*[[Exercise 5.10]]		*[[Exercise 5.10]]

			<b><u>HOMEWORK</u></b>

			Damian:
			*[[Exercise 5.1D]]
			*[[Exercise 5.2D]]
			*[[Exercise 5.3D]]
			*[[Exercise 5.4D]]
			*[[Exercise 5.5D]]
			*[[Exercise 5.8D]]
			*[[Exercise 5.10D]]

Erika: Week 2 moved to Sept 6-12: more clarity

2009-11-11T03:49:52Z

Week 2 moved to Sept 6-12: more clarity

← Older revision	Revision as of 03:49, 11 November 2009
(No difference)

Erika at 21:25, 27 September 2009

2009-09-27T21:25:06Z

← Older revision		Revision as of 21:25, 27 September 2009
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	*[[Exercise 5.3]]		*[[Exercise 5.3]]
	*[[Exercise 5.4]]		*[[Exercise 5.4]]
			*[[Exercise 5.5]]
			*[[Exercise 5.8]]
			*[[Exercise 5.10]]

Erika at 03:40, 22 September 2009

2009-09-22T03:40:01Z

← Older revision		Revision as of 03:40, 22 September 2009
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	In Chapter 5 of <i>Beginning Perl for Bioinformatics</i> "Motifs and Loops", we continued to learn about the basics of Perl language. This chapter explains how to: search for motifs in DNA or protein, interact with users at the keyboard, write data to files, use loops, use basic regular expressions, take different actions depending on the outcome of conditional tests, examine sequence data in detail by operating on strings and arrays.		In Chapter 5 of <i>Beginning Perl for Bioinformatics</i> "Motifs and Loops", we continued to learn about the basics of Perl language. This chapter explains how to: search for motifs in DNA or protein, interact with users at the keyboard, write data to files, use loops, use basic regular expressions, take different actions depending on the outcome of conditional tests, examine sequence data in detail by operating on strings and arrays.

	In addition, chapter 2 of Bioinformatics for Dummies, "How Most People Use Bioinformatics" gave us an overview on how to:		In addition, chapter 2 of <i>Bioinformatics for Dummies</i>, "How Most People Use Bioinformatics" gave us an overview on how to:
	-use PubMed		*-use PubMed
	-retrieve specific protein and DNA sequences		*-retrieve specific protein and DNA sequences
	-run a sequence/database comparison with BLAST		*-run a sequence/database comparison with BLAST
	-perform multiple sequence alignment with ClustlW		*-perform multiple sequence alignment with ClustlW


			----
			<b><u>HOMEWORK</u></b>

			Erika:
			*[[Exercise 5.1]]
			*[[Exercise 5.2]]
			*[[Exercise 5.3]]
			*[[Exercise 5.4]]

Damian at 14:55, 15 September 2009

2009-09-15T14:55:21Z

← Older revision		Revision as of 14:55, 15 September 2009
Line 4:		Line 4:

	In Chapter 5 of <i>Beginning Perl for Bioinformatics</i> "Motifs and Loops", we continued to learn about the basics of Perl language. This chapter explains how to: search for motifs in DNA or protein, interact with users at the keyboard, write data to files, use loops, use basic regular expressions, take different actions depending on the outcome of conditional tests, examine sequence data in detail by operating on strings and arrays.		In Chapter 5 of <i>Beginning Perl for Bioinformatics</i> "Motifs and Loops", we continued to learn about the basics of Perl language. This chapter explains how to: search for motifs in DNA or protein, interact with users at the keyboard, write data to files, use loops, use basic regular expressions, take different actions depending on the outcome of conditional tests, examine sequence data in detail by operating on strings and arrays.

			In addition, chapter 2 of Bioinformatics for Dummies, "How Most People Use Bioinformatics" gave us an overview on how to:
			-use PubMed
			-retrieve specific protein and DNA sequences
			-run a sequence/database comparison with BLAST
			-perform multiple sequence alignment with ClustlW

Erika at 03:36, 15 September 2009

2009-09-15T03:36:47Z

← Older revision		Revision as of 03:36, 15 September 2009
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	<b>Summary for Week 2</b>		<b>Summary for Week 2</b>

	In Chapter 5 of <i>Beginning Perl for Bioinformatics</i> "Motifs and Loops", we continued to learn about the basics of Perl language. This chapter explains how to: search for motifs in DNA or protein, interact with users at the keyboard, write data to files, use loops, use basic regular expressions, take different actions depending on the outcome of conditional tests, examine sequence data in detail by operating on strings and arrays.		In Chapter 5 of <i>Beginning Perl for Bioinformatics</i> "Motifs and Loops", we continued to learn about the basics of Perl language. This chapter explains how to: search for motifs in DNA or protein, interact with users at the keyboard, write data to files, use loops, use basic regular expressions, take different actions depending on the outcome of conditional tests, examine sequence data in detail by operating on strings and arrays.

	Chapter 1 of <i>Bioinformatics for Dummies</i> "Finding Out What Bioinformatics Can Do for You" gave us a general overview of the interrelatedness and importance of informatics and biology. In addition, this chapter provided a general biology background and it also addressed the type of questions bioinformatics can help you answer.

Erika at 03:34, 15 September 2009

2009-09-15T03:34:01Z

← Older revision		Revision as of 03:34, 15 September 2009
Line 1:		Line 1:
	Return to [[Bioinformatics]]		Return to [[Bioinformatics]]

	<b>Summary for Week 1</b>		<b>Summary for Week 2</b>

	In Chapter 5 of Beginning Perl for Bioinformatics "Motifs and Loops", we continued to learn about the basics of Perl language. This chapter explains how to: search for motifs in DNA or protein, interact with users at the keyboard, write data to files, use loops, use basic regular expressions, take different actions depending on the outcome of conditional tests, examine sequence data in detail by operating on strings and arrays.		In Chapter 5 of <i>Beginning Perl for Bioinformatics</i> "Motifs and Loops", we continued to learn about the basics of Perl language. This chapter explains how to: search for motifs in DNA or protein, interact with users at the keyboard, write data to files, use loops, use basic regular expressions, take different actions depending on the outcome of conditional tests, examine sequence data in detail by operating on strings and arrays.

	Chapter 1 of Bioinformatics for Dummies "Finding Out What Bioinformatics Can Do for You" gave us a general overview of the interrelatedness and importance of informatics and biology. In addition, this chapter provided a general biology background and it also addressed the type of questions bioinformatics can help you answer.		Chapter 1 of <i>Bioinformatics for Dummies</i> "Finding Out What Bioinformatics Can Do for You" gave us a general overview of the interrelatedness and importance of informatics and biology. In addition, this chapter provided a general biology background and it also addressed the type of questions bioinformatics can help you answer.

Erika at 03:33, 15 September 2009

2009-09-15T03:33:33Z

← Older revision		Revision as of 03:33, 15 September 2009
Line 1:		Line 1:
			Return to [[Bioinformatics]]

			<b>Summary for Week 1</b>

	In Chapter 5 of Beginning Perl for Bioinformatics "Motifs and Loops", we continued to learn about the basics of Perl language. This chapter explains how to: search for motifs in DNA or protein, interact with users at the keyboard, write data to files, use loops, use basic regular expressions, take different actions depending on the outcome of conditional tests, examine sequence data in detail by operating on strings and arrays.		In Chapter 5 of Beginning Perl for Bioinformatics "Motifs and Loops", we continued to learn about the basics of Perl language. This chapter explains how to: search for motifs in DNA or protein, interact with users at the keyboard, write data to files, use loops, use basic regular expressions, take different actions depending on the outcome of conditional tests, examine sequence data in detail by operating on strings and arrays.

	Chapter 1 of Bioinformatics for Dummies "Finding Out What Bioinformatics Can Do for You" gave us a general overview of the interrelatedness and importance of informatics and biology. In addition, this chapter provided a general biology background and it also addressed the type of questions bioinformatics can help you answer.		Chapter 1 of Bioinformatics for Dummies "Finding Out What Bioinformatics Can Do for You" gave us a general overview of the interrelatedness and importance of informatics and biology. In addition, this chapter provided a general biology background and it also addressed the type of questions bioinformatics can help you answer.

Erika: New page: In Chapter 5 of Beginning Perl for Bioinformatics "Motifs and Loops", we continued to learn about the basics of Perl language. This chapter explains how to: search for motifs in DNA or pro...

2009-09-15T03:19:25Z

New page: In Chapter 5 of Beginning Perl for Bioinformatics "Motifs and Loops", we continued to learn about the basics of Perl language. This chapter explains how to: search for motifs in DNA or pro...

New page

In Chapter 5 of Beginning Perl for Bioinformatics "Motifs and Loops", we continued to learn about the basics of Perl language. This chapter explains how to: search for motifs in DNA or protein, interact with users at the keyboard, write data to files, use loops, use basic regular expressions, take different actions depending on the outcome of conditional tests, examine sequence data in detail by operating on strings and arrays.

Chapter 1 of Bioinformatics for Dummies "Finding Out What Bioinformatics Can Do for You" gave us a general overview of the interrelatedness and importance of informatics and biology. In addition, this chapter provided a general biology background and it also addressed the type of questions bioinformatics can help you answer.