Newmodules - Revision history

Charliep at 02:00, 30 January 2017

2017-01-30T02:00:16Z

← Older revision		Revision as of 02:00, 30 January 2017
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	# mkdir /mounts/pollock/software/blast+		# mkdir /mounts/pollock/software/blast+
	# download and unpack source		# download and unpack source
	# ./configure --prefix="/mounts/pollock/software/blast+"		# ./configure --prefix=/mounts/pollock/software/blast+
	# make && make ~~test &&~~ make ~~install~~		# make && make install # and wait 3 hours... (make -j 1 to be conservative)
	# mkdir /mounts/pollock/software/Modules/3..../modulefiles		# mkdir /mounts/pollock/software/Modules/3.2.10/modulefiles
	# mkdir blast+		# mkdir blast+
	# vi blast+/2.3.0		# vi blast+/2.3.0 (see this file for an example to use with BLAST+)

Charliep: /* Installing new software to modules */

2017-01-29T19:58:06Z

Installing new software to modules

← Older revision		Revision as of 19:58, 29 January 2017
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	#############################################################################		#############################################################################
	</pre>		</pre>

			Another recipe, this one for blast+ on {hopper, pollock}:
			# mkdir /mounts/pollock/software/blast+
			# download and unpack source
			# ./configure --prefix="/mounts/pollock/software/blast+"
			# make && make test && make install
			# mkdir /mounts/pollock/software/Modules/3..../modulefiles
			# mkdir blast+
			# vi blast+/2.3.0

Anschwa: Created page with "= Installing new software to modules= * see also Cluster:Modules

 ###########INSTALL GCC####################################################  1.Go to mounts/server/..."

2017-01-29T18:40:30Z

Created page with "= Installing new software to modules= * see also Cluster:Modules <pre> ###########INSTALL GCC#################################################### 1.Go to mounts/server/..."

New page

= Installing new software to modules=

* see also [[Cluster:Modules]]

<pre>
###########INSTALL GCC####################################################

1.Go to mounts/server/software and create gcc directory
2.install gcc �wget http://mirrors.concertpass.com/gcc/releases/gcc-4.6.2/gcc-4.6.2.tar.gz'
3.unzip it tar xzf gcc-4.6.2.tar.gz
4.cd gcc-4.6.2 => �./contrib/download_prerequisites�
5.cd .. ��> mkdir �test_gcc�
6.cd �test_gcc�
7./mounts/pollock/software/gcc/gcc-4.6.2/configure --prefix=/mounts/pollock/software/gcc/4.6.2 --disable-multilib --enable-languages=c,c++,fortran
8.make
9.make install
10.make check-c++
11.make check-c
12.go to /mounts/pollock/software/Modules/3.2.10/modulefiles
13.mkdir gcc and cd gcc and vi 4.6.2
14.put this inside

###%Module1.0###############################################################
prereq modules

set VERSION 4.6.2
set LDIR /mounts/pollock/software
prepend-path PATH $LDIR/gcc/$VERSION/bin
prepend-path MANPATH $LDIR/gcc/$VERSION/share/man
prepend-path LD_LIBRARY_PATH $LDIR/gcc/$VERSION/lib64
module-whatis "A compiler toolchain, including {c,c++,fortran,java} compilers and benchmarking utilities"
##
15.module load gcc/4.6.2
16.gcc �version
#############################################################################
</pre>