Here - Revision history

Erika at 20:44, 30 January 2010

2010-01-30T20:44:26Z

← Older revision		Revision as of 20:44, 30 January 2010
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	2) Our specific interests<br>		2) Our specific interests<br>
	3) Explorations with Perl<br>		3) Explorations with Perl<br>
	-Other languages that could be used, too		*Other languages that could be used, too
	-Chp. 9		*Chp. 9
	-Chp. 10 (genebank)		*Chp. 10 (genebank)
	4) Idea for a course<br>		4) Idea for a course<br>
	5) Present Syllabus<br>		5) Present Syllabus<br>
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			<b>1) General overview of bioinformatics</b>

			The application of computational techniques to understand and organize biological data
			*Genomic
			*Structural
			*Processes

			Informatics includes databases, text string comparison, finding patterns, geometry, and simulation

	<b>2) Our specific interests</b>		<b>2) Our specific interests</b>
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	Erika will talk about her work at NIH		Erika will talk about her work at NIH

	-use this to illustrate why we felt an independent study was beneficial (as an introduction for the course proposal later in the talk)		*use this to illustrate why we felt an independent study was beneficial (as an introduction for the course proposal later in the talk)
	-also gives real examples of bioinfo applications that should be relevant to other students		*also gives real examples of bioinfo applications that should be relevant to other students

	<b>3) Explorations with Perl</b>		<b>3) Explorations with Perl</b>

2010-01-24T16:57:06Z

← Older revision		Revision as of 16:57, 24 January 2010
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	Discuss the increasing importance of cross-disciplinary interaction, especially in biology. We work with biologists, chemists, physicians, entemologists, statiticians.... It will be good for both biology students and CS students to learn to work with one another at the undergraduate level to share knowledge of different backgrounds and become familiar with a skillset from outside their own discipline.		Discuss the increasing importance of cross-disciplinary interaction, especially in biology. We work with biologists, chemists, physicians, entemologists, statiticians.... It will be good for both biology students and CS students to learn to work with one another at the undergraduate level to share knowledge of different backgrounds and become familiar with a skillset from outside their own discipline.

	<i>Core requirements for bioinfomaticians-- from conversations with companies such as Celera Genomics and Eli Lilly~~</i>~~		<i>Core requirements for bioinfomaticians</i> (from conversations with companies such as Celera Genomics and Eli Lilly)

	*Fairly deep background in some aspect of molecular biology		*Fairly deep background in some aspect of molecular biology

2010-01-24T16:56:23Z

@@ Line 26: / Line 26: @@
 <b>3) Explorations with Perl</b>
 Introduce the idea that many other scripting languages could be used. Then talk about the subject of our independent study.
@@ Line 35: / Line 36: @@
 *Commonly used<br>
 *Numerous modules<br>

2010-01-24T16:52:18Z

← Older revision		Revision as of 16:52, 24 January 2010
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	-use this to illustrate why we felt an independent study was beneficial (as an introduction for the course proposal later in the talk)		-use this to illustrate why we felt an independent study was beneficial (as an introduction for the course proposal later in the talk)
	-also gives real examples of bioinfo applications that should be relevant to other students		-also gives real examples of bioinfo applications that should be relevant to other students

			<b>3) Explorations with Perl</b>
			Introduce the idea that many other scripting languages could be used. Then talk about the subject of our independent study.

			*Easy to program<br>
			-Many built in functions for common bioinformatics tasks
			-examples
			*Faster to program<br>
			*Fewer lines of code<br>
			*Commonly used<br>
			*Numerous modules<br>

2010-01-24T16:49:22Z

← Older revision		Revision as of 16:49, 24 January 2010
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	<b>Colloquium Outline:</b>		<b>Colloquium Outline:</b>

	1) General overview of bioinformatics		1) General overview of bioinformatics<br>
	2) Our specific interests		2) Our specific interests<br>
	3) Explorations with Perl		3) Explorations with Perl<br>
	-Other languages that could be used, too		-Other languages that could be used, too
	-Chp. 9		-Chp. 9
	-Chp. 10 (genebank)		-Chp. 10 (genebank)
	4) Idea for a course		4) Idea for a course<br>
	5) Present Syllabus		5) Present Syllabus<br>
	6) Scaffolded assignments		6) Scaffolded assignments<br>
	7) Future directions		7) Future directions<br>

2010-01-23T22:14:47Z

@@ Line 1: / Line 1: @@
-Just fooling around with some stuff from Charlie's workshop on mash-ups...
+Return to [[Bioinformatics]]
-<googlemap
+<b>Colloquium Outline:</b>
-One of the huts in the Thmar Dah field site...
+) General overview of bioinformatics
-</googlemap>

2009-10-13T02:00:08Z

← Older revision		Revision as of 02:00, 13 October 2009
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	Just fooling around with some stuff from Charlie's workshop on mash-ups...		Just fooling around with some stuff from Charlie's workshop on mash-ups...

	<~~googlemaps~~		<googlemap
			version="0.9"
			lat="14.912"
			long="43.631"
			zoom="14"
			scale="yes"
			overview="yes">

			One of the huts in the Thmar Dah field site...

			</googlemap>